Illustrations are maintained by the administrator. Uploaded files change expression data only. How to upload your own data?
C. briggsae and C. tropicalis use the C. elegans illustration.
References
CenGEN · C. elegans scRNA-seq datasets
- L1. Taylor et al. (2025). A gene expression atlas of a juvenile nervous system. bioRxiv, preprint. Data used: L1 expression tables.
- L4 · Original (2021). Taylor et al. (2021). Molecular topography of an entire nervous system. Cell. Data used: original L4 TPM matrices (021821 release; thresholds 1–4).
- L4 · Updated. CenGEN. Updated L4 dataset, based on Taylor et al. (2021). Data used: L4app expression tables. Updated annotations separate VA1 from other VA neurons and VD from DD; cells with high unfolded-protein-response expression were removed. Data snapshot downloaded September 2026.
- Adult hermaphrodite. CenGEN. Adult hermaphrodite dataset. Data used: day-1 adult N2 expression tables. Cells were methanol-fixed before sequencing. See the dataset documentation for methods and references.
CenGEN app tables were downloaded on 11 September 2026 and are stored in this atlas; they are not a live connection to the source apps.
CaenoGen · L2 scRNA-seq datasets
- Toker et al. (2025). Divergence in neuronal signaling pathways despite conserved neuronal identity among Caenorhabditis species. Current Biology. Data used: published neuronal expression datasets for C. elegans N2, C. briggsae AF16 and C. tropicalis NIC203.
Mean expression is calculated from the published cell-level matrices using the selected Within Species or Across Species annotations. These values are not TPM; pooled groups do not resolve individual member neurons.